Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0779961.1c.2b with 4 members (extracellular sulfatase)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Glires / Rodentia / Myomorpha /

Muroidea /

Completeness score: 1.00

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This HOG has 20 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0779961.1c.2b	475	170	extracellular sulfatase
2	HOG:E0779961.1c	239	441	extracellular sulfatase
3	HOG:E0779961.1c.2b.4b	136	35	extracellular sulfatase
4	HOG:E0640563.1b	112	56	extracellular sulfatase SULF-1 homolog
5	HOG:E0640563	24	65	extracellular sulfatase SULF-1 homolog
6	HOG:E0779961	12	446	extracellular sulfatase
7	HOG:E0779961.1c.2b.5b	8	4	extracellular sulfatase
8	HOG:E0640563.1a	8	2	extracellular sulfatase SULF-1 homolog
9	HOG:E0779961.1c.2b.4a	7	2	extracellular sulfatase
10	HOG:E0779961.1c.2b.7b	4	1	extracellular sulfatase
11	HOG:E0779961.1c.2b.7a	4	1	extracellular sulfatase
12	HOG:E0779961.1c.2b.6b	4	1	extracellular sulfatase
13	HOG:E0779961.1c.2b.6a	4	1	extracellular sulfatase
14	HOG:E0779961.1c.2b.5b.2b	4	1	extracellular sulfatase
15	HOG:E0779961.1c.2b.5b.2a	4	1	extracellular sulfatase
16	HOG:E0779961.1c.1b	4	1	extracellular sulfatase
17	HOG:E0779961.1c.1a	4	1	extracellular sulfatase
18	HOG:E0640563.1b.1b	4	1	extracellular sulfatase SULF-1 homolog
19	HOG:E0678478	3	2	Sulfatase
20	HOG:E0779961.1c.2b.5a	2	1	extracellular sulfatase

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